I can agree about the robot at the top, but I didn't find the commercial creepy. Sure, I felt some disgust against it, but that was because it sucked, not because of the puppets.
What I wonder is why you don't feel like this about today's realistic video game characters. Are they an exception to the graph or something? Personally, I think the graph is just bull****. What I believe is what creeps people out about the robot is this:
It looks real enough for your brain to actually be able to think of it as a human being. However, the brain notices the small details in it's movement, behavior and/or appearance that makes it look non-human, and this causes some dislike, or even fear. Maybe it's some sort of animal instict, to be wary of that which is different, maybe as nature's way to prevent mutations, I don't know, I'm not an expert.
I could try to "prove" this by showing a picture of a scary face which isn't a robot or an animation, like this guy.

That's the Penguin, from Batman. Maybe not the best example, but I'm too lazy to do any real "research".
But then again, this is just something I made up on the spot, at 2:30 AM, with no previous knowledge about the subject, so I could be wrong. I just find it hard to believe that realistic robots, dolls and puppets are scary or disgusting just because they are robots, dolls or puppets, and I don't think the answer is something as simple as a graph. And I personally don't feel any disgust against the Polar Express characters either. Snow White is far creepier than that conductor.